species:   Fuoxy
pid:       PID0829
parent:    Fon_microconidia-m0005
paralog:   
locus:     Supercontig_1.1:4918427-4918696
matures:   ['AGGCUCAUGGAAUUGCGGCAU', 'UCCACAUCCAGAGCCAUGG']
srr:       SRR3921571
genome:    /Users/jax/+Genomes/Fungal_genomes/Fuoxy.broad.fusarium_oxysporum_f._sp._melonis_26406_1_supercontigs.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jiang2017-hp.SRR3921571.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jiang2017-hp.SRR3921571.cram Supercontig_1.1:4918427-4918696

10 out of bounds
18 alignments
16 proper strand
11 stranded perfect matches

             *********************                                                                                                                                                                                                           ***********************          
AGUGUGGCACCUCAUUCCACAUCCAGAGCCAUGGAAGCCAUGGAACGUCCAUAGAACAAUUCUAAUCAAACCCACAUACAAAGUUACAGUCCACAGCAAGUAAAGAAAAUAAGGCCUUGACCAUCUGUUCGGAAGUUUCGGAGCUAUUGGACUUACACGGACCAUUCAUGAAUCGUUUGGUUCUCAGGUUUCUUCUUUCAACCCGAAACCCACUCUCAACUCACAAACAUGCGCUCACCAGGCUCAUGGAAUUGCGGCAUGUGCUGUGCA
......((((..(((.((.(((((((((((.(((.(((((((....((((((((((...))))).((((..((..........((((............)))).........))..))))......((((.((....)).))))...)))))......((((((..(.......)..))))))...((((((............)))))).................)))).)))..)))))))).))))..)).)).)))....)))).
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCUCAUGGAAUUGCGGCAU---------- l=21 a=8 c
---------------UCCACAUCCAGAGCCAUGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=0 c*
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCUCAUGGAAUUGCGGCAU---------- l=21 a=8 ma
---------------UCCACAUCCAGAGCCAUGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=0 ma*

--------------------------------------------------------------------------------------------------------------------------AUCUGUUCGGAAGUUUCGGAa------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------CGGgCCAUUCAUGAAUCGUUUGGU----------------------------------------------------------------------------------------- l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGCUCAUGGAAUUGCGGCgU---------- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCUCAUGGAAUUGCGGC------------ l=19 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCUCAUGGAAUUGCGGCA----------- l=20 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCUCAUGGAAUUGCGGCAU---------- l=21 a=8 (c,ma)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAUGGAAUUGCGGCAUGUa------- l=20 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAUGGAAUUGCGGCAUGUGCU----- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUGGAAUUGCGGCAUGUGCUa---- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
